Outreach

Workshops and webinars
Talks
Demos

Twitter accounts: SfB

Instagam: ntfaka123

Workshops and webinars

  1. Metagenomics data analysis. Workshop. 3-6 April, 2017. Helsinki, Finland. videos of presentations..
  2. Aleksandr Agafonov, Lars Ailo Bongo, Inge Alexander Raknes, et al. ELIXIR Compute platform Webinar, Elixir, November 2016.
  3. Introduction to R. Workshop. Tromsø, Norway. June 2016.
  4. Espen M. Robertsen and Inge Alexander Raknes. Update on ELIXIR Pilot Actions launched in 2014: Marine metagenomics: towards user centric services Webinar, Elixir, June, 2015.

Talks

  1. Lars Ailo Bongo. ELIXIR activities in Norway.. NorduGrid 2017. Tromsø, Norway, June 2017.
  2. Lars Ailo Bongo. MMG: from proof-of-concept to production services at scale (part II). Elixir Compute Platform meeting. Prague, Czech Republic, June 2017.
  3. Bjørn Fjukstad. They Don’t Teach You This In School (yet) (in Norwegian), Energy On The Loose Conference, Tromsø, May 2017.
  4. Bjørn Fjukstad. Personalized breast cancer treatment in practice, Norwegian Translational Cancer Research Center, Tromsø May 2017.
  5. Bjørn Fjukstad. Low-cost Air Quality Monitoring Project in High-Schools (in Norwegian), Lektor2 Regionsamling, Tromsø March 2017.
  6. Johan Ravn. RespirAnalytics - Cloud Services for Real-time Detection and Classification of Abnormal Lung sounds. NFR SUD-ENT funding panel. Oslo, Norway. April 2017.
  7. Lars Ailo Bongo. Distributing META-pipe on ELIXIR compute resources. Elixir All-hands Meeting. Rome. Italy, March 2017.
  8. Lars Ailo Bongo. Challenges and approaches for providing a pipeline as a service. Flash talk. Elixir All-hands Meeting. Rome. Italy, March 2017.
  9. Lars Ailo Bongo. MMG: from proof-of-concept to production services at scale. Elixir Compute Platform meeting. Stockholm, Sweden, February 2017.
  10. Bjørn Fjukstad. Building systems for interactive data exploration in systems biology, Workshop on Cancer and the Immune System, Barbados, January 2017.
  11. Edvard Pedersen. A data management model for large-scale bioinformatics analysis. PhD defense. Dept. of Computer Science, University of Tromsø. January 2017.
  12. Edvard Pedersen. Data access in bioinformatics: Bottlenecks and other challenges specific to the bioinformatics domain. PhD trial lecture. Dept. of Computer Science, University of Tromsø. January 2017.
  13. Einar Holsbø. Predicting breast cancer metastasis from blood samples — “On variance and other problems”, Breast Cancer and the Immune System workshop, Barbados, 2017.
  14. Einar Holsbø. The pragmatic R programmer. Intro to writing reusable R code and bundling it in packages. Given at the Department of Community Medicine, University of Tromsø. 17th of November, 2016.
  15. Einar Holsbø. Version control and you. Intro to version control software (Git) and its place in reproducible data analysis. Given at the Department of Community Medicine, University of Tromsø. 16th of November, 2016.
  16. Lars Ailo Bongo. Our cloud usage - and not. Uninett Faggruppe for skyteknologi. November, 2016.
  17. Frode Opdahl. Virtual reality. Developer lunch at IT Dept. at University of Tromsø. November 2016.
  18. Lars Ailo Bongo. Virtual reality. Norstruct seminar. October 2016.
  19. Inge Alexander Raknes. META-pipe - architecture and design. NeLS WP2 Workshop, September 2016.
  20. Otto Anshus. Center for Bioinformatics at UiT. TUM, München. September 2016.
  21. Lars Ailo Bongo. META-pipe: marine metagenomics service. ELIXIR Innovation and SME Forum: Data-driven innovation in the aquaculture and marine industries. May 2016.
  22. Lars Ailo Bongo. Machine learning. NOTCH seminar, University of Tromsø, Norway. March 2016.
  23. Morten Grønnesby. Lung Sounds. CS-lunch, IFI, University of Tromsø, Norway. March 2016.
  24. Lars Ailo Bongo. Compute and storage requirements for META-pipe. Flash talk. ELIXIR all-hands meeting, Barcelona, Spain, March 2016.
  25. Inge Alexander Rakneas, Giacomo Tartari. WP6: Marine metagenomics. ELIXIR all-hands meeting, Barcelona, Spain, March 2016.
  26. Lars Ailo Bongo. Center for Bioinformatics (SfB). IFI, UiT, Tromsø, February 2016.
  27. Inge Alexander Raknes. NeLS WP2 Workshop, February 2016.
  28. Bjørn Fjukstad. High-performance reproducible data exploration applications in epidemiological studies. McGill Workshop on Genetic Networks, Barbados, January 2016.
  29. Lars Ailo Bongo. NELS - Overview and recent developments. NBS contact meeting, Tromsø, January 2016.
  30. Edvard Pedersen.Sequence Assembly in the Cloud, on the Grid, and in the Basement NBS contact meeting, Tromsø, January 2016.
  31. Lars Ailo Bongo. WP6: Marine metagenomics. Elixir WP4 meeting, Heathrow, UK, January 2016.
  32. Bjørn Fjukstad. Processing and p5js Teacher Conference in Programming, Oslo Nobember 2015. Teacher Conference in Programming, Tromsø September 2015.
  33. Einar Holsbø. Predicting cancer progression from blood gene expression (Alternate title: Some negative results). Machine Learning @ UiT weekly seminar. October, 2015.
  34. Lars Ailo Bongo. Big Biological Data. Dataforeningen, Tromsø, September, 2015.
  35. Bjørn Fjukstad Kodeklubben Tromsø Teacher Conference in Programming, Tromsø September 2015.
  36. Stian Hansen and Bjørn Fjukstad. Introduction to coding and different technologies Teacher Conference in Programming, Tromsø September 2015.
  37. Lars Ailo Bongo. META-pipe. WP6 - Elixir-Excelerate Kick-Off Meeting, Hinxton, UK. August, 2015.
  38. Inge Alexander Raknes. Artifactory and Jenkins. Developer lunch at IT Dept. at University of Tromsø. April 2015.
  39. Lars Ailo Bongo. Marine metagenomic infrastructure services as driver for research and industrial innovation. Elixir Compute Platforms Workshop. Amsterdam, Netherlands. March 2015.
  40. Lars Ailo Bongo. Computer system for lung sound analysis. Lung sounds analysis meeting. Aveiro, Portugal. March 2015.
  41. Bjørn Fjukstad. KVIK - a tool to visualize genomic data from the NOWAC post genome cohort. Department of Community Medicine seminar, University of Tromsø. March 2015.
  42. Edvard Pedersen. Integrating Data-Intensive Computing Systems with Biological Data Analysis Frameworks. CS-lunch seminar, Department of Computer Science, University of Tromsø. February 2015.
  43. Espen M. Robertsen and Inge Alexander Raknes. Metapipe - plans & challenges. NeLS technical services workshop. Tromsø, Norway. February 2015.
  44. Lars Ailo Bongo. Interactive data exploration. 14th Annual BCI-McGill Workshop, Barbados. January 2015.
  45. Lars Ailo Bongo. Interactive data exploration. NORSTRUCT annual meeting, Målselv, Norway. January 2015.
  46. Bjørn Fjukstad. Kvik: Interactive exploration of genomic data from the NOWAC postgenome biobank. CS-lunch, Department of Computer Science, University of Tromsø. January 2015.
  47. Edvard Pedersen. Enabling incremental updates. Elixir pilot project kick-off meeting. EBI, Hinxton, UK. October 2014.
  48. Inge Alexander Raknes. Metapipe - From a deployment perspective. Elixir pilot project kick-off meeting. EBI, Hinxton, UK. October 2014.
  49. Bjørn Fjukstad. Data Driven Documents (D3). Developer lunch at IT Dept. at University of Tromsø. October 2014.
  50. Bjørn Fjukstad. Kvik: Interactive exploration of biological pathways. BIO-3010 Modelling in Systems Biology. University of Tromsø. October 2014.
  51. Lars Ailo Bongo. METApipe - metagenomics analysis pipeline. NESUS First Working Groups Meeting. Madrid, Spain. July 2014.
  52. Bjørn Fjukstad. Kvik: Interactive Exploration of Multi-Omics Data from the NOWAC Postgenome Biobank (extended abstract). SocBiN Bioinformatics. Oslo, Norway. June 2014.
  53. Edvard Pedersen. Enabling incremental updates for bioinformatics workflows (extended abstract). SocBiN Bioinformatics. Oslo, Norway. June 2014.
  54. Giacomo Tartari. Go Language. Department of Information Technology seminar series. Tromsø, Norway, May 2014.
  55. Inge Alexander Raknes. The Scala Programming Language. Department of Information Technology seminar series. Tromsø, Norway, October 2013.
  56. Lars Ailo Bongo. Metagenomics - opportunities and computational challenges. Invited talk. The 11th Annual Meeting on High Performance Computing and Infrastructure in Norway NOTUR2012. Tromsø, Norway. June 2012.
  57. Lars Ailo Bongo. Large-scale data management in bioinformatics. Interdisciplinary lunch series, University of Tromsø. 2011.
  58. Lars Ailo Bongo. Adaptive Video Compression. PhD. trial lecture. Tromsø, Norway. February 2008.
  59. Lars Ailo Bongo. Reducing the Network Latency and Bandwidth Requirements of Parallel and Distributed Applications. Verdikt conference. Trondheim, Norway. October 2007.
  60. Lars Ailo Bongo, Kai Li, Olga Troyanskaya, Grant Wallace, Tore Larsen. Application Specific Compression for Remote Visualization of Genomics Applications. Rutgers-Helsinki Ph.D. Student Workshop on Spontaneous Networking 2006. Rutgers, NJ, USA. May 2006.
  61. Lars Ailo Bongo, Kai Li, Olga Troyanskaya, Grant Wallace, Tore Larsen. Application Specific Compression for Remote Visualization of Genomics Applications. Workshop on state-of-the-art in scientific and parallel computing (Para'06). Umeå, Sweden. June 2006.
  62. Lars Ailo Bongo, Otto Anshus, John Markus Bjørndalen. Experiences Visualizing Multi-cluster Parallel Applications. Seminar in Computer Graphics. Oslo, Norway. March 2003.

Demos

  1. Inge Alexander Raknes, Espen M. Robertsen. Marine metagenomics pilot: system and tools. Demo at Elixir all-hands meeting. Hinxton, UK. March 2015.
  2. Inge Alexander Raknes. META-pipe: Metagenomics annotation pipeline. Demo at the "Tools for analyzing high-throughput sequencing data" workshop. Oslo, Norway. March 2015.
  3. Giacomo Tartari. Demo of Mr. Clean: a tool for tracking and comparing the lineage of scientific visualization code. 2nd IEEE Working Conference on Software Visualization (VISSOFT 2014). September 2014, Victoria, Canada.
  4. Bjørn Fjukstad. Kvik: Interactive Exploration of multi-omics data from the NOWAC postgenome biobank. NOWAC postgenome group meeting. September 2014.
  5. Giacomo Tartari, Lars Tiede, John Markus Bjørndalen, Otto J. Anshus. World Opera demo for Faculty of Fine Arts. September 2014.
  6. List was started in August 2014.